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Surface Extraction

Available tools

Surface extraction in Fetpype is currenly available using the dHCP structural pipeline1, with the flags -surf and -all.

⚠️ Disclaimer: The dHCP pipeline is only available in the dev branch as of now.

Note: Surface extraction requires prior reconstruction and gestational age information. Refer to the dHCP configuration and requirements for more details.

  1. Antonios Makropoulos, Emma C Robinson, Andreas Schuh, Robert Wright, Sean Fitzgibbon, Jelena Bozek, Serena J Counsell, Johannes Steinweg, Katy Vecchiato, Jonathan Passerat-Palmbach, and others. The developing human connectome project: a minimal processing pipeline for neonatal cortical surface reconstruction. Neuroimage, 173:88–112, 2018. ↩